PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00508.50
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 338aa    MW: 37032.1 Da    PI: 8.4508
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00508.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.3e-21147196255
            AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+tae Aa+a+++a+++++g
  Jcr4S00508.50 147 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEAAARAYDEAALRFRG 196
                    8********.**********66.....56************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.6E-33146205IPR001471AP2/ERF domain
PROSITE profilePS5103225.725147204IPR001471AP2/ERF domain
PfamPF008471.9E-14147196IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23147205IPR016177DNA-binding domain
CDDcd000181.70E-23147206No hitNo description
SMARTSM003809.7E-38147210IPR001471AP2/ERF domain
PRINTSPR003677.9E-12148159IPR001471AP2/ERF domain
PRINTSPR003677.9E-12170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MCFLKVANPR EKGINKNLDE WVYQPSMMLQ QENKSNRNEQ PFGSMLSGLS REREMSAMVS  60
ALTHVVTGEV PADIINNEGN CSGSSSDGAN KRGREEEGGH TKLARSFGYV DRVNNTIDTS  120
TIATTPIMPQ THIYEHNDTV REEPRRKYRG VRQRPWGKWA AEIRDPFKAA RVWLGTFDTA  180
EAAARAYDEA ALRFRGSKAK LNFPENVRLL PSTSNPMTTQ VAISNSQNTL FSVPQMVNNP  240
RLDLGVGGYQ RHQAVSLYDQ MVLSSSNASS HFQTFSFAAS STTYSSSSPQ SSVPLIIPAP  300
RPADLRTATN QSSGGGGSAD ISEPALWSDC GHYTSSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-23146207163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075283.10.0PREDICTED: ethylene-responsive transcription factor ABR1
SwissprotQ9FGF84e-40ABR1_ARATH; Ethylene-responsive transcription factor ABR1
TrEMBLA0A067KSQ10.0A0A067KSQ1_JATCU; Uncharacterized protein
STRINGPOPTR_0005s08940.12e-72(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.13e-26ERF family protein